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Pervasive Technology Labs at Indiana University

Publications

Knowledge Acquisition & Projection Lab Publications

  1. Shankar, K., Wild, D., and An, J. (in press).  Information technology in times of crisis: Considering knowledge management for disaster management. In E. Bolisani (Ed.) Building the Knowledge Society on the Internet: Making value from information exchange.
  2. McMullen, D.F. (2007) “The Common Instrument Middleware Architecture: Experiences and Future Directions.” INGRID 2007 - Instrumenting the Grid. 2nd International Workshop on Distributed Cooperative Laboratories Santa Margherita Ligure Portofino, ITALY, April 16-18, 2007. (in press)
  3. Fox, G.C., Guha, R., McMullen, D.F., Mustacoglu, A.F., Pierce, M.E., Topcu, A.E., Wild, D.J. (2007) “Web 2.0 for Grids and e-Science” (To appear) in Proceedings of INGRID 2007 - Instrumenting the Grid 2nd International Workshop on Distributed Cooperative Laboratories, S. Margherita Ligure Portofino, ITALY. April 18 2007
  4. Ian Atkinson, Douglas du Boulay, Clinton Chee, Kenneth Chiu, Paul Coddington, Andrea Gerson, Tristan King, Donald McMullen, Romain Quilici, Peter Turner, Andrew Wendelborn, Mathew Wyatt, Donglai Zhang (2007) “Developing CIMA based Remote Access for Collaborative e-Research.” 5th Australasian Symposium on Grid Computing and e-Research (AusGrid 2007). Ballarat. January, 2007.
  5. Kratz, Timothy K., Peter Arzberger, Barbara J. Benson, Chih-Yu Chiu, Kenneth Chiu, Longjiang Ding, Tony Fountain, David Hamilton, Paul C. Hanson, Yu Hen Hu, Fang-Pang Lin, Donald F. McMullen, Sameer Tilak, Chin Wu. (2006) Towards a Global Lake Ecological Observatory Network.  Publications of the Karelian Institute 145:51-63.
  6. Ma, Yu. “A Composable Data Management Architecture for Scientific Applications" (2006)  Dissertation, Indiana University, 2006.
  7. D. McMullen and T. Reichherzer. (2006) “Identity and Functionality in the Common Instrument Middleware Architecture.” Applied Ontology 3 (2006), IOS Press.
  8. I.M. Atkinson, D. du Boulay, C. Chee, K. Chiu, T. King, D.F. McMullen, R. Quilici,  N.G.D. Sim, P. Turner, M. Wyatt. (2006) “CIMA Based Remote Instrument and Data Access: An Extension into the Australian e-Science Environment.” Proceedings of IEEE International Conference on e-Science and Grid Computing (e-Science 2006). December 2006. Amsterdam, The Netherlands.
  9. McMullen, D.F., I.M. Atkinson, K. Chiu, P. Turner, K. Huffman, R. Quilici, M. Wyatt. (2006) “Toward Standards for Integration of Instruments into Grid Computing Environments.” Proceedings of IEEE International Conference on e-Science and Grid Computing (e-Science 2006). December 2006. Amsterdam, The Netherlands.
  10. Yin, H., Brenes-Barahona, S., McMullen, D. F., Pierce, M., Huffman, K., Fox, G. (2006) “A PERMIS-based Authorization Solution Between Portlets and Back-end Web Services.” Proceedings of GCE 2006: Workshop on Grid Computing Portals held in conjunction with SC06. Tampa, FL, November 12, 2006.
  11. Yin, H., D.F. McMullen, M.A. Nacar, M. Pierce, K. Huffman, G. Fox, Y. Ma. (2006) “Providing Portlet-Based Client Access to CIMA Enabled Crystallographic Instruments, Sensors, and Data.” (Poster/Paper) Proceedings of The 7th IEEE/ACM International Conference on Grid Computing (Grid2006), Barcelona, September 28th-29th 2006.
  12. Kratz, T., B. Benson, P. Arzberger, K. Chiu, L. Ding, T. Fountain, T. Hansen, P. Hanson, Y. H. Hu, N. Kimura, D.F. McMullen, S. Tilak. (2006) “Automating Scaling and Data Processing in a Network of Sensors: Towards a Global Network for Lake Metabolism Research and Education.” (Poster) Long Term Ecological Research Network All Hands Meeting, September 15, 2006. Estes Park, CO.
  13. Atkinson, I., D. du Boulay, C. Chee, K. Chiu, K.L. Huffman, D.F. McMullen, R. Quilici, P. Turner and M. Wyatt. (2006) “Common Instrument Middleware Architecture: Extensions for the Australian e-Research Environment.” Proceedings, UK e-Science All Hands Meeting, September 2006.
  14. McMullen, D.F. and K. Huffman. (2006) “Connecting users to instruments and sensors: portals as multi-user GUIs for instrument and sensor facilities.” Concurrency Computat.: Pract. Exper. 2006; 18:1-11.
  15. Huffman, J., Donald F. McMullen, . (2006) “Remote Monitoring and Access to Instruments and Data. The CIMA Crystallography Portal.” Proceedings of the 2006 Annual Meeting of the American Crystallographic Association to be held, July 22 - 27, in Honolulu, Hawaii.
  16. Bramley, R., Chiu, K., Devadithya, T., Gupta, N., Hart, C., Huffman, J.C., Huffman, K.L., Ma, Y., McMullen, D.F. (2006) “Instrument Monitoring, Data Sharing and Archiving Using Common Instrument Middleware Architecture (CIMA)”. Journal of Chemical Information and Modeling, 46(3) p.1017-25, May-June 2006.
  17. Devadithya, T., Chiu, K., Huffman, K., McMullen, D.F. “The Common Instrument Middleware Architecture: Overview of Goals and Implementation.” Proceedings of IEEE International Conference on e-Science and Grid Computing (e-Science 2005). December 5-8, 2005. Melbourne, Australia.
  18. McMullen, D.F., and Huffman, K. “Connecting Users to Instruments and Sensors: Portals as Multi-user GUIs for Instrument and Sensor Facilities.” Proceedings of GCE 2005: Workshop on Grid Computing Portals held in conjunction with SC05. Seattle, WA, November 18, 2005.
  19. Leake, D., Bogaerts, S., Evans, M., McMullen, D. 2005.  Contextual Support for Remote Cooperative Troubleshooting: Lessons From a Naturalistic Study. In Soubie, K.-L., and Zaraté, P.,  eds., Proceedings of the International Workshop on Cooperative  Systems and Context. CEUR. October, 2005.
  20. McMullen, D.F., Devadithya, T., Chiu, K. “Integrating Instruments and Sensors into the Grid with CIMA Web Services.” Proceedings of the Third APAC Conference on Advanced Computing, Grid Applications and e-Research (APAC05). September 25-30, 2005. Gold Coast, Australia. Available at http://www.apac.edu.au/apac05/presentations/McMullen_Rick.PDF.
  21. Crabtree, A., Evans, M.A., Fraser, M., Tolmie, P., & McMullen, D. (2005). Situating ubiquitous computing in everyday life: Bridging the social and technical divide. Workshop proposal submitted to the UbiComp 2005 International Conference, September 11-15, 2005, Tokyo, Japan.
  22. Evans, M. A., D. Leake, D. F. McMullen, S. Bogaerts. “Context  in Remote Distributed Troubleshooting: Perspective on a Socio-Technical Study.” Proceedings of the Fifth International and Interdisciplinary Conference on Modeling and Using Context (CONTEXT-05), Paris, France, July 5-8, 2005.
  23. Evans, M.A. (2005). The effects of institutional elements on knowledge and work: A Critical-Realist-inspired analysis of context. 4th International Critical Management Studies Conference, July 4-6, 2005, Cambridge, UK.
  24. Leake, D., S. Bogaerts, M. A. Evans, D. F McMullen, M. Oder, A.Valerio. "Using Cases to Support Divergent Roles in Distributed Collaboration". Eighteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS-2005, May 15-17, 2005), special track on Case-Based Reasoning, AAAI Press, Menlo Park, CA, 2005.
  25. Bramley, Randall, Fang Liu, Kenneth Chiu, George Turner. "A Data Stream Analysis of the MMSF Automated Photometric Telescope". Indiana University CS Department Technical Report 2004.  
  26. Chiu, Kenneth. "XBS: A Streaming Binary Serializer for High Performance Computing". In Proceedings of the High Performance Computing Symposium 2004. Society for Computer Simulation International, 2004.
  27. Evans, Michael A. "Chasing a Fault across Ship and Shore:  Explaining the distribution of knowledge and work in the US Navy". 2004. Performance Improvement Quarterly.
  28. Evans, Michael A. "A case of supporting distributed knowledge and work in the US Navy: The challenges of knowledge management to HPT". 2004.  TechTrends.
  29. Evans, Michael A. "Use cases: A tool for collaborative work among performance technologists and software developers". 2004 International Performance Improvement Conference & Expo, April 19-23, 2004, Tampa, FL.
  30. Evans, Michael A. "Knowledge and performance in context: A case of troubleshooting a complex system in the US Navy". 2004 International Performance Improvement Conference & Expo, April 19-23, 2004, Tampa, FL.
  31. Evans, Michael A., Donald F. McMullen, David Leake. "Getting Knowledge Where it's Needed: Building Systems to Support Collaborative Problem Solving in Virtual Teams". UbiComp 2004.
  32. Bogaerts, Steve, David Leake.  "Facilitating CBR for Incompletely-Described Cases: Distance Metrics for Partial Problem Descriptions.  (ECCBR-2004). Advances in Case-based Reasoning. Springer Verlag, Berlin, 2004, pp.62-76.
  33. Chiu, K., W. Liu. "A Compiler-Based Approach to Schema-Specific XML Parsing". First International Workshop on High Performance XML  Processing, WWW 2004, May 17-22, New York, NY.
  34. Evans, M.A., D.F. McMullen. "Proposing an organizational memory to manage knowledge discovery in scientific collaborations". ACM Conference on Computer Supported Cooperative Work, November 6-10, 2004, Chicago, IL
  35. Evans, M.A., D. F. McMullen, D. Leake, S. Bogaerts.  "Remote collaborative help: Using cases and concept maps to coordinate and contextualize knowledge". UbiComp 2004 International Conference, September 7-10, 2004, Nottingham, UK.
  36. Evans, M.A. (2004). Use cases: A tool for collaborative work among performance technologists and software developers. Paper selected for the 2004 International Performance Improvement Conference & Expo, April 19-23, 2004, Tampa, FL.
  37. Bramley, Randall,  Kenneth Chiu, John C. Huffman, Kia Huffman, and Donald F. McMullen, Instruments and Sensors as Network Services: Making Instruments First Class Members of the Grid, Indiana University CS Department Technical Report 588, December 2003.
  38. Leake, David B., Ana Maguitman, Thomas Reichherzer, Alberto Cañas, Marco Carvalho, Marco Arguedas, Sofia Brenes, and Tom Eskridge. Aiding Knowledge Capture by Searching for Extensions of Knowledge Models. Proceedings of the Second International Conference on Knowledge Capture (K-Cap 2003). ACM Press. 10 pages.
  39. Leake, David B. and Raja Sooriamurthi. Dispatching Cases Versus Merging Case-Bases: When MCBR Matters. Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS-2003), AAAI Press, 2003, pp. 129-133.
  40. Leake, David B., Ana Maguitman, and Thomas Reichherzer. Topic Extraction and Extension to Support Concept Mapping. Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference (FLAIRS-2003), AAAI Press, 2003, pp. 325-32
  41. Evans, M.A. (2003). Knowledge and work in context: A case of troubleshooting a complex system in the US Navy. Unpublished doctoral dissertation. Indiana University, Bloomington.
  42. Evans, M.A. (2003). The distribution and use of knowledge and performance: A case of virtual work in the US Navy. Paper presented at the AECT 2003 International Conference. Anaheim, CA.
  43. Evans, M.A. (2003). Ubiquitous support for knowledge and work.  Paper presented at the UbiComp 2003 International Conference. Seattle, WA.
  44. Leake, D., "Human-Centered CBR: Integrating Case-Based Reasoning with Knowledge Construction and Extension", Invited address, the Fifth International Conference on Case-Based Reasoning (ICCBR-2003), Trondheim, Norway, June 2003.
  45. Leake, D., "Context and Experience", Opening invited address,  Fourth International and Interdisciplinary Conference on Modeling and Using Context (CONTEXT-03), Stanford, California, June 2003.
  46. McMullen, D., "Case-Based Reasoning as an Enabling Technology for Next Generation Diagnostic Systems", American Society of Naval Engineers Symposium, September 16-18, 2003, Bloomington, IN.
  47. Leake, D., "Knowledge Projection Project: Case-Based Reasoning," Presented to Naval Sea Systems Command, Washington, DC, June 2003.
  48. McMullen, D., "Middleware for Grid-enabling instruments", UK e-Science Workshop on Instruments and the Grid, June 16, 2003, Daresbury, UK.
  49. McMullen, D.F., & Evans, M.A. (2003). Managing and troubleshooting complex systems: Knowledge management in organizations. Invited talk on April 17, 2003 sponsored by Department of Instructional Systems Technology, Indiana University, Bloomington.
  50. Rupali Parab, Rick McMullen, and Beth Plale, "Comparison of Two Java Based Publish-Subscribe Systems for Knowledge Projection Project", Pervasive Technology Labs Technical Report, 2003.

Knowledge Acquisition & Projection Lab Presentations

  1. McMullen, D.F., Deng, C., Pierce, M., Huffman, K. “Real-time Web 2.0: Evolution of Middleware for Grid-based Instruments and Sensors.” Open Grid Forum 21, October 15, 2007, Seattle WA.
  2. McMullen, D.F. “Enabling Remote Access to Instruments for AU-US Collaboration.” Workshop on Driving eResearch Collaboration Across the Pacific September 11-12, 2007, Perth, W.A. Australia.
  3. McMullen, D.F. “Overcome by Events? The Red Queen Effect, Web 2.0 and the Future of the Grid.” APAC07, October 8-12, 2007, Perth, Western Australia.
  4. McMullen, D.F. “Evolution of Middleware for Grid-based Instruments and Sensors or Why Facebook, MySpace and Social Computing Really Matter.” Invited talk at Monash University, August 14, 2007, Melbourne, Australia.
  5. An, J. and Shankar, K. “Memory practices in times of crisis: The BECIS system.” 3rd International Conference on Communities and Technologies. Michigan State University, Lansing MI. June 28-30, 2007.
  6. McMullen, D.F. “Using Grid Technology for Multi-facility Data Management.” Second International CrystalGrid Workshop on Crystallographic Data Management. Bloomington, Indiana. April 26-28, 2007.
  7. McMullen, D.F., T. Reichherzer. “The Common Instrument Middleware Architecture (CIMA) Instrument Ontology & Applications.” Second Workshop on Formal Ontologies Meet Industry. Trento, Italy, December 15, 2006.
  8. Atkinson, I.M., D. du Boulay, C. Chee, K. Chiu, T. King, D.F. McMullen, R. Quilici, N.G.D. Sim, P. Turner, M. Wyatt. “CIMA Based Remote Instrument and Data Access: An Extension into the Australian e-Science Environment.” Presentation at IEEE e-Science and Grid CRL Workshop, Amsterdam, The Netherlands, December 4, 2006.
  9. McMullen, D.F., I. M. Atkinson, K. Chiu, P. Turner, K. Huffman, R. Quilici, M. Wyatt. “Toward Standards for Integration of Instruments into Grid Computing Environments.” Presentation at eScience 2006, Amsterdam, The Netherlands, December 4, 2006.
  10. McMullen, D.F., K. Huffman. “Overview of the Common Instrument Middleware Architecture (CIMA)”. Presentation given in conjunction with the Indiana University research exhibit at SC06. November 12-15, 2006. Tampa, FL
  11. Devadithya, T., D. F. McMullen. “CIMA Channel and Plug-in Architecture.” Presentation given in conjunction with the Indiana University research exhibit at SC06. November 15, 2006. Tampa, FL
  12. Reichherzer, T., D. F. McMullen. “CIMA Ontology.” Presentation given in conjunction with the Indiana University research exhibit at SC06. November 12-15, 2006. Tampa, FL
  13. Devadithya, T. “CIMA Channel and Plug-in Architecture.” Presentation given in conjunction with the Indiana University research exhibit at SC06. November 12-15, 2006. Tampa, FL
  14. Yin, H., S. Brenes-Barahona,  D.F. McMullen, M. Pierce, K. Huffman, G. Fox. “A PERMIS-based Authorization Solution between Portlets and Back-end Web Services.” Presentation at GCE06 Workshop on Grid Computing Portals, Tampa, Florida, November 13, 2006.
  15. McMullen, D. F. “Instruments on the Grid: The Common Instrument Middleware Architecture. Overview and Applications.” Data and Search Institute Seminar Series, Indiana University, November 8, 2006
  16. McMullen, D. F. “Sharing and Remote Access to Analytical Instruments using the Common Instrument Middleware Architecture.” Techpoint Indiana Technology Summit 9. Indianapolis, IN. October 31, 2006.
  17. McMullen, D.F. “Welcome to the U-CEO Program.” Opening address for the U-CEO Program, Ubiquitous Society. Seoul, South Korea. October 19, 2006.
  18. McMullen, D.F., “CIMA and Semantic Interoperability for Networked Instruments and Sensors.” Open Collaboration: Networking Semantic Interoperability Across Distributed Organizations and Their Ontologies, Workshop at the National Science Foundation, Washington, DC, August 15, 2006.
  19. McMullen, D.F., A. Valerio. “Sensor Agent Execution Environment (SAGE3):
    Community development of monitoring infrastructure”. Automating Scaling All Hands Meeting, Trout Lake Station, August 29, 2006.
  20. McMullen, D.F., “Common Instrument Middleware Architecture (CIMA),” Invited talk, Net-Ready Sensors: The Way Forward, Workshop sponsored by NIST and ORNL, Oak Ridge National Laboratory, Oak Ridge, TN, August 3, 2006.
  21. Huffman, John C., Donald F. McMullen, Kianosh L. Huffman. “Remote Monitoring and Access to Instruments and Data. The CIMA Crystallography Portal.” American Crystallographic Association 2006 Annual Meeting, July 22 - 27 Honolulu, Hawaii.
  22. Evans, M.A., D.F. McMullen. “Interagency Coordination in Science and Engineering Research: Implications for Policy Formation and International Collaboration.” Invited talk. TÜBITAK, Ankara, Turkey. June 1, 2006.
  23. McMullen, D. F., “High Performance Computing, Grid Computing, and International Collaboration.” Invited talk, Middle East Technical University, Ankara, Turkey. June 1, 2006.
  24. McMullen, D. F., “Common Instrument Middleware Architecture and Federation of Instrument Resources for X-ray Crystallography.” PRAGMA 10, Townsville, Australia, March 28, 2006.
  25. McMullen, D.F., “Network Attached Instruments: Overview of the Common Instrument Middleware Architecture and Application to X-Ray Diffraction Crystallography.” Canadian eScience Workshop, University of Saskatchewan. November 21, 2005
  26. McMullen, D.F., Huffman, K., Gupta, N., Ma, Y., “Overview and Applications of the Common Instrument Middleware Architecture (CIMA). SC05, Seattle, WA. November 14-17, 2005.
  27. McMullen, D.F., “Overview of the Common Instrument Middleware Architecture (CIMA). Australian Research Council Workshop on e-Research, Melbourne, Australia. November 2, 2005
  28. McMullen, D.F., “Instruments and Sensors on the Grid: The CIMA Middleware Project.” Presentation at the iLight Symposium 2005, September 21, 2005, Indiana University-Purdue University at Indianapolis.
  29. McMullen, D.F., Chiu, K., "CIMA: Scientific Instruments as First Class Members of the Grid", Molecular and Materials Structure Network Workshop, March 28, 2005, Marysville, Australia.
  30. McMullen, D.F., "Instruments on the Grid", Donald F. McMullen, Invited talk at First South African International Workshop on Sensor Web Enablement. March 3, 2005, Pretoria, South Africa.
  31. McMullen, D.F., "Overview of CIMA and the Instrument Middleware Project", CIMA-LOOKING Workshop, January 18, 2005, Indianapolis.
  32. Huffman, J. "X-Ray Crystallography, the quick tutorial", CIMA-LOOKING Workshop, January 18, 2005, Indianapolis.
  33. Huffman, K. "CIMA Crystallography Application", CIMA-LOOKING Workshop, January 18, 2005, Indianapolis.
  34. Chiu, K., "Web Services and CIMA", CIMA-LOOKING Workshop, January 18, 2005, Indianapolis.
  35. Ma, Y., "CIMA Data Management", CIMA-LOOKING Workshop, January 18, 2005, Indianapolis.
  36. Chiu, K. "Making instruments first-class members of the Grid". The Crystal-Grid Collaboratory: A Foundation Workshop, September 13-17, 2004, Southampton UK.
  37. Huffman, J. "Crystallography: It's All About the Data". The Crystal-Grid Collaboratory: A Foundation Workshop, September 13-17, 2004, Southampton UK.
  38. Huffman, J. "Data Storage and Archiving". The Crystal-Grid Collaboratory: A Foundation Workshop, September 13-17, 2004, Southampton UK.
  39. McMullen, D.F. "Grid-Based Instruments".  Invited talk given at James Cook University, July 2, 2004, Townsville, AU.
  40. McMullen, Donald F. "Instruments on the Grid". US-Australia Workshop on High-Performance Grids and Applications. Sydney, Australia. June 8-9, 2004.
  41. McMullen, Donald F. "Instruments as Network Services: A Middleware Initiative." Molecular and Materials Structure Network meeting, University of Sydney, February 9, 2004.
  42. McMullen, Donald F., "The Common Instrument Middleware Architecture Project", invited talk given at the Great Lakes and Central US Environmental Observatory (GLACEO) Fall Meeting, October 15-17, 2004, University of Michigan Biological Station, Pellston, MI
  43. McMullen, D.F. "Middleware for Instruments".  CANARIE Advanced Networks Workshop 2004, November 23, 2004, Halifax, Nova Scotia, CA.
  44. Leake, D., "Knowledge Projection Project: Case-Based Reasoning," Presented to Naval Sea Systems Command, Washington, DC, June 2003.
  45. McMullen, D., "Middleware for Grid-enabling instruments", UK e-Science Workshop on Instruments and the Grid, June 16, 2003, Daresbury, UK.
  46. McMullen, D.F., & Evans, M.A. (2003). Managing and troubleshooting complex systems: Knowledge management in organizations. Invited talk on April 17, 2003 sponsored by Department of Instructional Systems Technology, Indiana University, Bloomington.
  47. Technical Trends: Networking², Workshop on Data and Collaboratories in the Biomedical Community, 16  18 September 2002, Ballston Virginia. Sponsored by the National Center for Research Resources, National Institutes of Health.
  48. “The Grid Operations Center: An Essential Support Structure for Grid Computing”, Keynote Address at Grid Forum Korea, 12 July, 2002, Seoul, Korea.
  49. “TransPAC and Global Terabit Research Network (GTRN) Updates”, Pragma Workshop II, 10 July 2002, Seoul, Korea.
  50. “An Architecture for Knowledge Organization and Presentation in Distance Support of Maintenance Activities”, Donald F. McMullen and David Leake, American Society of Naval Engineers Symposium, “State of the Art Fleet Support: Balancing Technology and Readiness”, May 14-16, 2002, Bloomington, IN.
  51. “TransPAC High-performance connectivity between the US and the Asia-Pacific region and Related Projects”, PRAGMA Workshop I , March 11, 2002, San Diego Supercomputer Center.
  52. “High Performance Networks, GigaPoPs, and the Local Impact of Networks”, Invited talk at the Tsukuba WAN Conference, March 15, 2001, Tsukuba, Ibaraki, Japan.
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